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1099 vs W-2 — How Your Taxes Are Completely Different

TaxClutch Team1 min read

If you're going from a regular paycheck job to freelance work — or running both at once — you need to understand how 1099 and W-2 income are treated completely differently by the IRS. Here's the side-by-side.

Withholding

W-2: Your employer withholds federal income tax, state income tax, Social Security, and Medicare from every paycheck. You barely see it.

1099: Nothing is withheld. The full payment lands in your account, and you owe taxes on it later. This is the single biggest mental shift new freelancers have to make.

Payroll Tax (FICA vs SE Tax)

W-2: You pay 7.65% (6.2% Social Security + 1.45% Medicare). Your employer matches it out of their pocket — you never see that half.

1099: You pay both halves yourself — 15.3% total. That's called self-employment tax. It's the most common surprise for new freelancers.

Deductions

W-2: You take the standard deduction (or itemize) on personal expenses. You can't deduct most work expenses anymore (the 2018 tax law eliminated unreimbursed employee deductions for most workers).

1099: You can deduct legitimate business expenses — home office, mileage, software, equipment, half of SE tax, health insurance, retirement contributions. These reduce both your income tax and your SE tax.

Filing Frequency

W-2: One annual filing. Done.

1099: One annual filing PLUS quarterly estimated tax payments throughout the year (April 15, June 15, September 15, January 15) if you expect to owe more than $1,000.

The QBI Bonus for 1099

1099 freelancers under the income thresholds get a 20% Qualified Business Income deduction — federal income tax only — that W-2 employees don't. This often makes 1099 income tax less than a comparable W-2 salary, even after SE tax.

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